PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G128900.1
Common NameB456_008G128900, LOC105763948
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 114aa    MW: 12446.5 Da    PI: 6.4788
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G128900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like361.5e-1150752449
             G2-like 24 sekAtPktilelmkvkgLtlehvkSH 49
                        s +AtPk+i+elm+v+gLt+++vkSH
  Gorai.008G128900.1 50 SSVATPKQIRELMQVDGLTNDKVKSH 75
                        357*********************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-84775IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-85175IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MATSDECCSV QLIDGDGSFN GTGIESFIKE VKLYECGLSY AVVSIMGPQS SVATPKQIRE  60
LMQVDGLTND KVKSHSFMSH CLVSVHYFGL KLLVVGICQW KQPCFCSCIP FFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437809.11e-79PREDICTED: uncharacterized protein LOC105763948
TrEMBLA0A0D2T5A11e-79A0A0D2T5A1_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1799626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-10G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]